Uses of Class
org.biopax.paxtools.controller.PathAccessor

Packages that use PathAccessor

Package	Description
org.biopax.paxtools.pattern.constraint	Package for constraints.
org.biopax.paxtools.pattern.util	Package for several utility classes.
org.biopax.paxtools.query.wrapperL3	This package contains TODO annotate!

Uses of PathAccessor in org.biopax.paxtools.pattern.constraint

Methods in org.biopax.paxtools.pattern.constraint with parameters of type PathAccessor

Modifier and Type	Method and Description
protected Set	LinkedPE.access(PathAccessor pa, Set<BioPAXElement> seed, Set<BioPAXElement> all) Uses the given PathAccessor to access fields of the seed and return only new elements that is not in the given element set (all).

Uses of PathAccessor in org.biopax.paxtools.pattern.util

Fields in org.biopax.paxtools.pattern.util declared as PathAccessor

Modifier and Type	Field and Description
protected static PathAccessor	PhysicalEntityChain.PE2FEAT Accessor to the modification term.
protected static PathAccessor	PhysicalEntityChain.PE2TERM Accessor to the modification term.

Uses of PathAccessor in org.biopax.paxtools.query.wrapperL3

Methods in org.biopax.paxtools.query.wrapperL3 with parameters of type PathAccessor

Modifier and Type	Method and Description
protected void	StringFieldFilter.addAccessor(PathAccessor acc, Class<? extends BioPAXElement> clazz) Adds the given PathAccessor to the list of accessors to use to get field values of objects and their related objects.